Scientific Software and Resources

ETE Toolkit: an open source library for the reconstruction, analysis and visualization of phylogenetic trees.
http://etetoolkit.org

EggNOG Database: a phylogenomic resource providing orthology and functional annotations for prokaryotic and eukaryotic species.
http://eggnog.embl.de

EggNOG-mapper: a program for fast functional annotation of genomes and metagenomes.
http://eggnog-mapper.embl.de

Other tools and utilities can be found under GitHub repositories
https://github.com/jhcepas